# biology/haplohseq - The NetBSD Packages Collection

Identify regions of allelic imbalance

    Haplohseq identifies regions of allelic imbalance (AI) in sequencing
    data obtained from impure samples where AI events exist in a
    potentially low proportion of cells in the sample.  Input to the
    software includes a VCF file of genotypes and estimated phased
    genotypes.

- Source version: `haplohseq-0.1.2.2nb4`
- Maintainer: bacon AT NetBSD.org
- Website: https://sites.google.com/site/integrativecancergenomics/software/haplohseq
- License: mit
- Package history: cvs, hg, git

## Build dependencies

devel/boost-headers pkgtools/mktools devel/gmake pkgtools/cwrappers

## Runtime dependencies

devel/boost-libs lang/python313 lang/python313 devel/boost-libs

## Binary packages

OS | Architecture | Version
--- | --- | ---
(none)

Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.

## Available build options

(none)

## Known vulnerabilities

(no vulnerabilities known)

The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.

Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.

Problem reports, updates or suggestions for this package should be reported with send-pr.